STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_0309PFAM: Amino acid permease-associated region; KEGG: txy:Thexy_2185 amino acid permease-associated region. (504 aa)    
Predicted Functional Partners:
Tsac_2400
KEGG: txy:Thexy_0851 hypothetical protein.
  
     0.563
Tsac_0308
Dipeptidase; KEGG: txy:Thexy_2184 dipeptidase; TIGRFAM: Peptidase M20A, peptidase V related; PFAM: Peptidase M20; Peptidase M20, dimerisation.
       0.536
Tsac_0310
KEGG: txy:Thexy_2186 hypothetical protein.
       0.523
Tsac_1342
Alpha amylase catalytic region; KEGG: txy:Thexy_0614 Pullulanase; PFAM: Glycosyl hydrolase, family 13, catalytic region; Glycoside hydrolase, family 13, N-terminal Ig-like region; Alpha-amylase, C-terminal all beta; Fibronectin, type III; S-layer homology region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; Alpha-amylase, C-terminal all beta; Fibronectin, type III.
   
 0.451
Tsac_1346
Alpha amylase catalytic region; KEGG: txy:Thexy_0618 cyclomaltodextrin glucanotransferase; PFAM: Glycosyl hydrolase, family 13, catalytic region; Alpha-amylase, C-terminal all beta; Cell surface receptor IPT/TIG; Glycoside hydrolase, carbohydrate-binding; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; Alpha-amylase, C-terminal all beta.
   
 0.451
Tsac_1354
Alpha amylase catalytic region; KEGG: txy:Thexy_0626 cyclomaltodextrinase; PFAM: Glycosyl hydrolase, family 13, catalytic region; Glycoside hydrolase, family 13, N-terminal Ig-like region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region.
   
 0.451
Tsac_2176
KEGG: txy:Thexy_1628 oligopeptide transporter, OPT family; TIGRFAM: Oligopeptide transporter OPT; Oligopeptide transporter OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily.
  
    0.414
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.