STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_0717Hypothetical protein; KEGG: thx:Thet_0393 LuxR family transcriptional regulator. (272 aa)    
Predicted Functional Partners:
Tsac_0429
Transcriptional regulator, LuxR family; KEGG: tte:TTE2508 putative regulator of acetoin metabolism; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.
 
 
 0.838
Tsac_0716
KEGG: dhd:Dhaf_3570 hypothetical protein.
       0.618
Tsac_0612
Putative PAS/PAC sensor protein; TIGRFAM: PAS; HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; GAF; PAS fold; HAMP linker domain; KEGG: txy:Thexy_0045 PAS/PAC sensor protein; SMART: Metal-dependent phosphohydrolase, HD region; PAS; HAMP linker domain; PAC motif; GAF.
  
 
 0.553
Tsac_1208
Putative sigma54 specific transcriptional regulator; TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; KEGG: txy:Thexy_0485 sigma54 specific transcriptional regulator; SMART: ATPase, AAA+ type, core; PAS.
 
  
 0.539
Tsac_2488
KEGG: txy:Thexy_0812 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54.
 
  
 0.516
Tsac_0779
KEGG: bcr:BCAH187_A1914 putative sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like.
  
 
 0.511
Tsac_2190
KEGG: txy:Thexy_1034 DegS sensor signal transduction histidine kinase; PFAM: Sensor DegS; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like.
  
 
 0.511
Tsac_0416
PFAM: Alcohol dehydrogenase, iron-type; Aldehyde dehydrogenase; KEGG: txy:Thexy_2316 acetaldehyde dehydrogenase (acetylating); In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.472
Tsac_0738
KEGG: txy:Thexy_0149 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain.
  
 
 0.468
Tsac_1263
KEGG: txy:Thexy_0542 PTS system transcriptional activator; PFAM: RNA polymerase sigma factor 54, interaction; PRD; Phosphotransferase system, fructose subfamily IIA component; SMART: ATPase, AAA+ type, core.
  
    0.465
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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