STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_0834KEGG: tbo:Thebr_0944 hypothetical protein. (507 aa)    
Predicted Functional Partners:
Tsac_0835
PFAM: Protein of unknown function DUF324; Protein of unknown function DUF57; KEGG: tbo:Thebr_0945 hypothetical protein.
 
 
 0.987
Tsac_0836
PFAM: Protein of unknown function DUF324; KEGG: tnr:Thena_0827 hypothetical protein.
 
 
 0.987
Tsac_0838
PFAM: Protein of unknown function DUF324; KEGG: tbo:Thebr_0948 hypothetical protein.
 
   
 0.948
Tsac_0833
KEGG: tbo:Thebr_0943 hypothetical protein.
       0.819
Tsac_0837
KEGG: tbo:Thebr_0947 hypothetical protein.
       0.807
Tsac_0853
PFAM: Protein of unknown function DUF87; KEGG: csc:Csac_2593 hypothetical protein.
  
     0.704
Tsac_0839
AIG2 family protein; PFAM: AIG2-like; KEGG: tam:Theam_0546 AIG2 family protein.
       0.635
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.460
Tsac_0171
KEGG: thx:Thet_0155 nucleotide-binding protein PINc.
  
     0.403
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.