STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_0837KEGG: tbo:Thebr_0947 hypothetical protein. (192 aa)    
Predicted Functional Partners:
Tsac_0836
PFAM: Protein of unknown function DUF324; KEGG: tnr:Thena_0827 hypothetical protein.
     
 0.808
Tsac_0834
KEGG: tbo:Thebr_0944 hypothetical protein.
       0.807
Tsac_0833
KEGG: tbo:Thebr_0943 hypothetical protein.
       0.797
Tsac_0835
PFAM: Protein of unknown function DUF324; Protein of unknown function DUF57; KEGG: tbo:Thebr_0945 hypothetical protein.
       0.788
Tsac_0838
PFAM: Protein of unknown function DUF324; KEGG: tbo:Thebr_0948 hypothetical protein.
     
 0.762
Tsac_0839
AIG2 family protein; PFAM: AIG2-like; KEGG: tam:Theam_0546 AIG2 family protein.
       0.635
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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