STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftsECell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. (228 aa)    
Predicted Functional Partners:
Tsac_1238
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 0.998
Tsac_0332
PFAM: Protein of unknown function DUF214, permase predicted; KEGG: txy:Thexy_0875 hypothetical protein.
 
    
 0.901
Tsac_2370
PFAM: Protein of unknown function DUF214, permase predicted; KEGG: txy:Thexy_0875 hypothetical protein.
 
    
 0.901
Tsac_1647
TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: gym:GYMC10_1364 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.
 
     
0.900
Tsac_2654
KEGG: txy:Thexy_0651 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component.
      0.889
Tsac_1239
PFAM: Peptidase M23; KEGG: txy:Thexy_0518 peptidase M23.
 
   
 0.873
Tsac_1236
KEGG: txy:Thexy_0515 CdaR family transcriptional regulator.
       0.735
Tsac_1241
KEGG: txy:Thexy_0520 PDZ/DHR/GLGF domain protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF.
  
  
 0.662
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.603
Tsac_1240
TIGRFAM: Peptidase S41A, C-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: txy:Thexy_0519 carboxyl-terminal protease; SMART: Peptidase S41; PDZ/DHR/GLGF.
       0.597
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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