STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_1274KEGG: mas:Mahau_2096 hypothetical protein. (588 aa)    
Predicted Functional Partners:
Tsac_1275
KEGG: mas:Mahau_2277 alpha-L-fucosidase; PFAM: Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29.
       0.608
Tsac_1273
KEGG: cpy:Cphy_1549 hypothetical protein.
       0.556
Tsac_1277
PFAM: Glycoside hydrolase, family 31; KEGG: cki:Calkr_0507 glycoside hydrolase family 31; Belongs to the glycosyl hydrolase 31 family.
       0.502
Tsac_1276
PFAM: Glycoside hydrolase, family 42, N-terminal; Beta-galactosidase trimerisation; Beta-galactosidase C-terminal; KEGG: pmo:Pmob_0829 beta-galactosidase.
       0.487
Tsac_1272
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1548 binding-protein-dependent transport systems inner membrane component.
       0.412
Tsac_1271
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1547 binding-protein-dependent transport systems inner membrane component.
       0.402
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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