STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_1370PFAM: Integrase, catalytic core; KEGG: ere:EUBREC_2190 hypothetical protein. (300 aa)    
Predicted Functional Partners:
Tsac_1371
PFAM: Transposase IS3/IS911; KEGG: txy:Thexy_2360 hypothetical protein.
 
  
 0.952
Tsac_0468
PFAM: Transposase IS3/IS911; KEGG: txy:Thexy_2360 hypothetical protein.
 
  
 0.797
Tsac_1372
KEGG: tep:TepRe1_0594 hypothetical protein.
       0.563
Tsac_0471
PFAM: Transposase IS3/IS911; KEGG: cth:Cthe_2772 transposase IS3/IS911.
  
 0.534
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.