STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_1742KEGG: txy:Thexy_1371 sporulation integral membrane protein YlbJ; TIGRFAM: Sporulation integral membrane protein YlbJ; PFAM: Nucleoside recognition. (387 aa)    
Predicted Functional Partners:
Tsac_2049
KEGG: txy:Thexy_1503 sporulation protein YqfD; TIGRFAM: Putative stage IV sporulation YqfD; PFAM: Putative stage IV sporulation YqfD.
 
   
 0.843
Tsac_2050
Sporulation protein YqfC; TIGRFAM: Protein of unknown function DUF1429; KEGG: txy:Thexy_1504 sporulation protein YqfC.
 
   
 0.810
Tsac_0298
TIGRFAM: Sporulation stage III, transcriptional regulator SpoIIID; KEGG: txy:Thexy_2174 sporulation transcriptional regulator SpoIIID.
  
  
 0.793
Tsac_1597
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.793
Tsac_0755
KEGG: txy:Thexy_0166 stage II sporulation protein R; TIGRFAM: Sporulation stage II, protein R; PFAM: Sporulation stage II, protein R.
  
   
 0.790
Tsac_1576
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.788
Tsac_0823
KEGG: txy:Thexy_0224 sporulation protein YabP; TIGRFAM: Sporulation protein YabP; PFAM: Sporulation protein YabP.
  
   
 0.783
Tsac_1934
KEGG: txy:Thexy_1179 stage III sporulation protein AE; TIGRFAM: Sporulation stage III, protein AE; PFAM: Sporulation stage III, protein AE.
  
    0.779
gpr
Germination protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.774
Tsac_1935
KEGG: txy:Thexy_1178 stage III sporulation protein AD; TIGRFAM: Sporulation stage III, protein AD; PFAM: Sporulation stage III, protein AD.
  
     0.773
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.