STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_1953KEGG: txy:Thexy_1160 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Tsac_1956
PFAM: Type II secretion system F domain; KEGG: txy:Thexy_1157 Type II secretion system F domain protein.
  
  
 0.915
Tsac_1958
KEGG: txy:Thexy_1155 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core.
  
 
 0.888
Tsac_1954
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.867
Tsac_1949
PFAM: Late competence development protein ComFB; KEGG: txy:Thexy_1164 Late competence development protein ComFB.
 
    0.841
Tsac_1951
KEGG: txy:Thexy_1162 hypothetical protein.
  
  
 0.801
Tsac_1950
KEGG: txy:Thexy_1163 hypothetical protein.
     
 0.778
Tsac_1946
KEGG: txy:Thexy_1167 hypothetical protein.
  
  
 0.767
Tsac_1947
PFAM: Fimbrial assembly; KEGG: txy:Thexy_1166 Fimbrial assembly family protein.
  
  
 0.767
Tsac_1948
KEGG: txy:Thexy_1165 Tfp pilus assembly protein ATPase PilM-like protein protein.
  
  
 0.764
Tsac_1952
KEGG: txy:Thexy_1161 hypothetical protein.
       0.762
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.