STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_2088PFAM: Bacterial extracellular solute-binding, family 1; KEGG: chd:Calhy_1948 extracellular solute-binding protein family 1. (457 aa)    
Predicted Functional Partners:
Tsac_2089
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: cac:CA_C0428 sugar permease.
  0.988
Tsac_2090
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1077 glycerol-3-phosphate ABC transporter permease.
 0.988
Tsac_2091
PFAM: Glycerol-3-phosphate responsive antiterminator; KEGG: bbe:BBR47_55600 glycerol uptake operon antiterminator regulatory protein.
 
    0.759
Tsac_1230
ABC transporter related protein; KEGG: txy:Thexy_0509 glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 1; SMART: ATPase, AAA+ type, core.
 
 
 0.699
Tsac_1511
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: txy:Thexy_1669 ABC transporter transmembrane protein.
   0.616
Tsac_2294
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ppy:PPE_00340 sugar ABC transporter permease.
   0.615
Tsac_0496
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE1937 ABC-type sugar transport systems, permease components.
 
 0.587
Tsac_2324
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mas:Mahau_2313 CUT1 family carbohydrate ABC transporter membrane protein 1.
 
 0.549
Tsac_0150
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bse:Bsel_0414 binding-protein-dependent transporter inner membrane component.
 
 0.540
Tsac_0149
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bse:Bsel_0415 binding-protein-dependent transporter inner membrane component.
   0.536
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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