STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_2204PFAM: Protein of unknown function DUF445, transmembrane; KEGG: txy:Thexy_1020 hypothetical protein. (199 aa)    
Predicted Functional Partners:
Tsac_2205
KEGG: txy:Thexy_1019 sporulation protein YtxC; TIGRFAM: Sporulation protein YtxC; PFAM: Sporulation protein YtxC.
 
     0.708
Tsac_0666
PFAM: G5; Protein of unknown function DUF348; 3D; KEGG: txy:Thexy_0097 G5 domain protein.
 
   
 0.644
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
       0.543
Tsac_2206
KEGG: txy:Thexy_1018 hypothetical protein.
       0.527
Tsac_0301
S-layer domain-containing protein; PFAM: S-layer homology region; KEGG: txy:Thexy_2177 S-layer domain-containing protein.
  
     0.462
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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