STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_2286KEGG: txy:Thexy_0968 spore germination protein; TIGRFAM: Spore germination GerAB; PFAM: Spore germination GerAB. (363 aa)    
Predicted Functional Partners:
Tsac_0950
KEGG: txy:Thexy_0272 germination protein, Ger(X)C family; TIGRFAM: Spore germination GerAC; PFAM: Spore germination GerAC.
 
  
 0.802
Tsac_0949
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: txy:Thexy_0271 GerA spore germination protein.
 
  
 0.760
Tsac_0754
KEGG: txy:Thexy_0165 germination protein, Ger(X)C family; TIGRFAM: Spore germination GerAC; PFAM: Spore germination GerAC.
 
  
 0.742
Tsac_0752
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: txy:Thexy_0163 GerA spore germination protein.
 
  
 0.741
Tsac_1909
KEGG: txy:Thexy_1204 stage II sporulation protein M; TIGRFAM: Sporulation stage II, protein M; PFAM: Protein of unknown function DUF95, transmembrane.
  
     0.696
Tsac_0753
KEGG: txy:Thexy_0164 spore germination protein; TIGRFAM: Spore germination GerAB; PFAM: Spore germination GerAB.
  
     0.680
Tsac_1541
Protein of unknown function UPF0180; PFAM: Uncharacterised protein family UPF0180; KEGG: txy:Thexy_1639 hypothetical protein.
  
     0.632
Tsac_0758
KEGG: txy:Thexy_0169 germination protein YpeB; TIGRFAM: Spore germination YpeB; PFAM: Peptidase M4, propeptide, PepSY.
 
     0.628
Tsac_2287
PFAM: Aldo/keto reductase; KEGG: txy:Thexy_0967 NADP-dependent oxidoreductase.
       0.623
Tsac_1576
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.566
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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