STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_2325PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mas:Mahau_2314 CUT1 family carbohydrate ABC transporter substrate-binding protein. (446 aa)    
Predicted Functional Partners:
Tsac_2324
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mas:Mahau_2313 CUT1 family carbohydrate ABC transporter membrane protein 1.
   0.906
Tsac_2323
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mas:Mahau_2312 CUT1 family carbohydrate ABC transporter membrane protein 2.
 
   0.866
Tsac_1456
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: txy:Thexy_1733 extracellular solute-binding protein family 1.
  
     0.630
Tsac_2326
KEGG: tit:Thit_0045 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI.
 
     0.624
Tsac_1454
KEGG: txy:Thexy_1735 two component AraC family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC type; SMART: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC domain.
  
     0.599
Tsac_1298
PFAM: Protein of unknown function DUF624; KEGG: txy:Thexy_0571 hypothetical protein.
 
    0.591
Tsac_0202
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ckn:Calkro_0159 binding-protein-dependent transport systems inner membrane component.
   0.584
Tsac_1230
ABC transporter related protein; KEGG: txy:Thexy_0509 glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 1; SMART: ATPase, AAA+ type, core.
  
 
 0.570
Tsac_0166
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: txy:Thexy_2052 ABC transporter transmembrane protein.
   0.563
Tsac_1463
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: txy:Thexy_1726 ABC transporter transmembrane protein.
   0.562
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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