STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_2426Phage portal protein, HK97 family; KEGG: pjd:Pjdr2_1541 portal protein; TIGRFAM: Phage portal protein, HK97; PFAM: Phage portal protein. (423 aa)    
Predicted Functional Partners:
Tsac_2424
KEGG: cbk:CLL_A0040 phage major capsid protein, HK97 family; TIGRFAM: Phage major capsid protein, HK97; PFAM: Phage major capsid protein, HK97.
 
 
 0.981
Tsac_2427
Terminase; PFAM: Phage Terminase; KEGG: cbk:CLL_A0045 phage terminase, large subunit.
 
   
 0.962
Tsac_2429
PFAM: HNH endonuclease; KEGG: pjd:Pjdr2_1538 HNH endonuclease.
 
  
 0.953
Tsac_2425
KEGG: mas:Mahau_2912 phage prohead protease, HK97 family; TIGRFAM: Peptidase U35, phage prohead HK97; PFAM: Peptidase U35, phage prohead HK97.
 
   
 0.931
Tsac_2422
Phage head-tail adaptor; TIGRFAM: Conserved hypothetical protein CHP01563; KEGG: bbe:BBR47_53750 hypothetical protein.
  
 
 0.900
Tsac_2419
TIGRFAM: Phage major tail protein phi13; KEGG: clj:CLJU_c03640 phage protein.
 
   
 0.870
Tsac_2421
TIGRFAM: Phage protein, HK97, gp10; KEGG: clj:CLJU_c03620 putative phage-like protein.
 
    0.830
Tsac_2428
KEGG: cbe:Cbei_0905 hypothetical protein.
       0.819
Tsac_2423
Putative phage DNA packaging-like protein; TIGRFAM: Protein of unknown function, phage; KEGG: pjd:Pjdr2_1545 phage protein (for DNA packaging).
       0.775
Tsac_2420
KEGG: clj:CLJU_c03630 hypothetical protein.
       0.734
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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