STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ME1_00863FeS assembly SUF system protein. (133 aa)    
Predicted Functional Partners:
ME1_00860
FeS assembly ATPase SufC.
 
  
 0.910
ME1_00861
FeS assembly protein SufD.
 
   
 0.899
ME1_00862
Cysteine desulfurase, SufS subfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.842
ME1_00859
FeS assembly protein SufB.
 
   
 0.792
ME1_00884
Hypothetical protein.
  
    0.614
ME1_00864
Hypothetical protein.
       0.553
ME1_01387
Hypothetical protein.
 
 
 0.490
ME1_00858
Hypothetical protein.
       0.436
ME1_00870
Hypothetical protein.
  
 
 0.408
Your Current Organism:
Bartonella vinsonii arupensis
NCBI taxonomy Id: 1094562
Other names: B. vinsonii subsp. arupensis OK-94-513, Bartonella vinsonii subsp. arupensis OK-94-513, Bartonella vinsonii subsp. arupensis str. OK-94-513, Bartonella vinsonii subsp. arupensis strain OK-94-513
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.