KATNA1 protein (Phytophthora sojae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KATNA1

Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. (577 aa)

Predicted Functional Partners:

G4YIB5_PHYSP

0.772

G4YSD6_PHYSP

0.751

G5AAP4_PHYSP

0.742

G4YJ87_PHYSP

0.716

G4YNI4_PHYSP

0.716

G4YM53_PHYSP

0.707

G4YXL1_PHYSP

0.702

G4YTS1_PHYSP

0.690

G4ZMQ6_PHYSP

0.689

G5A3M3_PHYSP

0.689

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YIB5_PHYSP	KATNA1	G4YIB5	G4Z0P9	Katanin p80 WD40 repeat-containing subunit B1 homolog; May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays; Belongs to the WD repeat KATNB1 family.	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	0.772
G4YJ87_PHYSP	G4YM53_PHYSP	G4YJ87	G4YM53	VWFA domain-containing protein.	Uncharacterized protein.	0.998
G4YJ87_PHYSP	G4YNI4_PHYSP	G4YJ87	G4YNI4	VWFA domain-containing protein.	PCI domain-containing protein.	0.999
G4YJ87_PHYSP	G4YTS1_PHYSP	G4YJ87	G4YTS1	VWFA domain-containing protein.	Uncharacterized protein.	0.998
G4YJ87_PHYSP	G4YXL1_PHYSP	G4YJ87	G4YXL1	VWFA domain-containing protein.	PCI domain-containing protein.	0.999
G4YJ87_PHYSP	G4ZMQ6_PHYSP	G4YJ87	G4ZMQ6	VWFA domain-containing protein.	USP domain-containing protein.	0.996
G4YJ87_PHYSP	G5A3M3_PHYSP	G4YJ87	G5A3M3	VWFA domain-containing protein.	RPN2_C domain-containing protein; Belongs to the proteasome subunit S1 family.	0.998
G4YJ87_PHYSP	G5AAP4_PHYSP	G4YJ87	G5AAP4	VWFA domain-containing protein.	PCI domain-containing protein.	0.999
G4YJ87_PHYSP	KATNA1	G4YJ87	G4Z0P9	VWFA domain-containing protein.	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	0.716
G4YM53_PHYSP	G4YJ87_PHYSP	G4YM53	G4YJ87	Uncharacterized protein.	VWFA domain-containing protein.	0.998
G4YM53_PHYSP	G4YNI4_PHYSP	G4YM53	G4YNI4	Uncharacterized protein.	PCI domain-containing protein.	0.999
G4YM53_PHYSP	G4YTS1_PHYSP	G4YM53	G4YTS1	Uncharacterized protein.	Uncharacterized protein.	0.990
G4YM53_PHYSP	G4YXL1_PHYSP	G4YM53	G4YXL1	Uncharacterized protein.	PCI domain-containing protein.	0.999
G4YM53_PHYSP	G4ZMQ6_PHYSP	G4YM53	G4ZMQ6	Uncharacterized protein.	USP domain-containing protein.	0.997
G4YM53_PHYSP	G5A3M3_PHYSP	G4YM53	G5A3M3	Uncharacterized protein.	RPN2_C domain-containing protein; Belongs to the proteasome subunit S1 family.	0.999
G4YM53_PHYSP	G5AAP4_PHYSP	G4YM53	G5AAP4	Uncharacterized protein.	PCI domain-containing protein.	0.999
G4YM53_PHYSP	KATNA1	G4YM53	G4Z0P9	Uncharacterized protein.	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	0.707
G4YNI4_PHYSP	G4YJ87_PHYSP	G4YNI4	G4YJ87	PCI domain-containing protein.	VWFA domain-containing protein.	0.999
G4YNI4_PHYSP	G4YM53_PHYSP	G4YNI4	G4YM53	PCI domain-containing protein.	Uncharacterized protein.	0.999
G4YNI4_PHYSP	G4YTS1_PHYSP	G4YNI4	G4YTS1	PCI domain-containing protein.	Uncharacterized protein.	0.994

page 1 of 4

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About