STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001312405_01926Unannotated protein. (251 aa)    
Predicted Functional Partners:
GCA_001312405_01927
Unannotated protein.
 
  0.991
GCA_001312405_01925
Unannotated protein.
 
  0.985
GCA_001312405_04653
Unannotated protein.
 
  0.975
GCA_001312405_02648
Unannotated protein.
 
  0.974
GCA_001312405_04651
Unannotated protein.
 
  0.974
GCA_001312405_04918
Unannotated protein.
 
 0.958
GCA_001312405_05685
Unannotated protein.
  
  0.916
GCA_001312405_05180
Unannotated protein.
  
  0.908
GCA_001312405_04977
Unannotated protein.
  
 0.907
GCA_001312405_03221
Unannotated protein.
 
  0.885
Your Current Organism:
Clostridium sp. NkU1
NCBI taxonomy Id: 1095009
Other names: C. sp. NkU-1, Clostridium sp. JCM 10519, Clostridium sp. NkU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.