STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001312405_06093Unannotated protein. (377 aa)    
Predicted Functional Partners:
GCA_001312405_06097
Unannotated protein.
 
  
 0.898
GCA_001312405_06090
Unannotated protein.
 
     0.846
GCA_001312405_06091
Unannotated protein.
 
    0.815
GCA_001312405_06092
Unannotated protein.
       0.773
GCA_001312405_06095
Unannotated protein.
       0.672
GCA_001312405_06098
Unannotated protein.
 
  
 0.666
GCA_001312405_06081
Unannotated protein.
 
     0.581
GCA_001312405_06094
Unannotated protein.
       0.565
GCA_001312405_06778
Unannotated protein.
 
    0.558
GCA_001312405_06005
Unannotated protein.
  
     0.525
Your Current Organism:
Clostridium sp. NkU1
NCBI taxonomy Id: 1095009
Other names: C. sp. NkU-1, Clostridium sp. JCM 10519, Clostridium sp. NkU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.