STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000975055_00025Unannotated protein. (667 aa)    
Predicted Functional Partners:
GCA_000975055_01781
Unannotated protein.
  
 
 
 0.922
GCA_000975055_01782
Unannotated protein.
    
 
 0.918
GCA_000975055_01745
Unannotated protein.
  
 
   0.846
GCA_000975055_00201
Unannotated protein.
    
   0.816
GCA_000975055_00024
Unannotated protein.
 
     0.805
GCA_000975055_01634
Unannotated protein.
 
  
 0.657
GCA_000975055_00030
Unannotated protein.
    
  0.631
GCA_000975055_01694
Unannotated protein.
     
 0.592
GCA_000975055_00026
Unannotated protein.
       0.580
GCA_000975055_00029
Unannotated protein.
       0.580
Your Current Organism:
Demequina sediminicola
NCBI taxonomy Id: 1095026
Other names: D. sediminicola, DSM 24867, Demequina sediminicola Hamada et al. 2013, Demequina sp. HR08-43, NBRC 105855, strain HR08-43
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.