STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000975055_01634Unannotated protein. (682 aa)    
Predicted Functional Partners:
GCA_000975055_00019
Unannotated protein.
  
 0.999
GCA_000975055_00020
Unannotated protein.
  
 0.999
GCA_000975055_00299
Unannotated protein.
  
 0.999
GCA_000975055_00504
Unannotated protein.
  
 0.999
GCA_000975055_01003
Unannotated protein.
  
 0.999
GCA_000975055_01638
Unannotated protein.
 
 0.999
GCA_000975055_02098
Unannotated protein.
 
 0.999
GCA_000975055_00024
Unannotated protein.
   
 0.994
GCA_000975055_00038
Unannotated protein.
   
 0.994
GCA_000975055_00680
Unannotated protein.
 
 
 0.990
Your Current Organism:
Demequina sediminicola
NCBI taxonomy Id: 1095026
Other names: D. sediminicola, DSM 24867, Demequina sediminicola Hamada et al. 2013, Demequina sp. HR08-43, NBRC 105855, strain HR08-43
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.