STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0C9X1V7Unplaced genomic scaffold K443scaffold_633, whole genome shotgun sequence. (1067 aa)    
Predicted Functional Partners:
A0A0C9X4W4
Unplaced genomic scaffold K443scaffold_99, whole genome shotgun sequence.
    
  0.466
A0A0C9X7T6
Unplaced genomic scaffold K443scaffold_8, whole genome shotgun sequence.
    
  0.466
A0A0C9XTL7
Unplaced genomic scaffold K443scaffold_8, whole genome shotgun sequence.
    
  0.466
A0A0C9XKT2
Unplaced genomic scaffold K443scaffold_62, whole genome shotgun sequence.
    
  0.449
A0A0C9XX99
Unplaced genomic scaffold K443scaffold_59, whole genome shotgun sequence.
    
  0.437
A0A0C9Y5T4
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
  0.418
A0A0C9X7L7
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
  0.415
A0A0C9Y2U8
Unplaced genomic scaffold K443scaffold_8, whole genome shotgun sequence.
    
  0.415
MED10
Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
  0.415
MED17
Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
  0.414
Your Current Organism:
Laccaria amethystina
NCBI taxonomy Id: 1095629
Other names: L. amethystina LaAM-08-1, Laccaria amethystina LaAM-08-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.