STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EID34228.1ABC transporter, ATP-binding protein. (290 aa)    
Predicted Functional Partners:
EID34238.1
SagB-type dehydrogenase domain protein.
  
    0.846
EID32222.1
ATPase, AAA family; Belongs to the AAA ATPase family.
 
 
 0.800
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.733
EID34226.1
ABC-2 type transporter.
  
 
 0.726
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.723
EID32759.1
ATP synthase, delta/epsilon subunit, beta-sandwich domain protein.
   
   0.712
atpG
ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.663
EID32834.1
WbqC-like protein.
   
   0.663
EID34235.1
YcaO-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
  
  
 0.662
EID34239.1
Bacteriocin biosynthesis cyclodehydratase domain protein.
       0.632
Your Current Organism:
Prevotella sp. F0472
NCBI taxonomy Id: 1095752
Other names: P. sp. oral taxon 306 str. F0472, Prevotella sp. oral taxon 306 str. F0472
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