STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL06856.1Signal peptidase, endoplasmic reticulum-type. (362 aa)    
Predicted Functional Partners:
atpE
V/A-type H+-transporting ATPase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
  
 0.765
SDK82932.1
PDZ domain-containing protein.
 
  
 0.748
atpF
V/A-type H+-transporting ATPase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
  
  0.736
SDK16157.1
Presenilin-like membrane protease, A22 family.
  
     0.693
SDJ48197.1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase.
  
  
 0.690
SDK46369.1
Hypothetical protein.
  
     0.683
SDK92301.1
Hypothetical protein.
  
    0.683
SDK77868.1
V/A-type H+-transporting ATPase subunit K.
 
  
 0.679
SDK46403.1
Replication factor A1.
  
     0.672
atpC
V/A-type H+-transporting ATPase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
 0.669
Your Current Organism:
Natronorubrum texcoconense
NCBI taxonomy Id: 1095776
Other names: CECT 8067, DSM 25211, JCM 17497, N. texcoconense, Natronorubrum sp. B4, Natronorubrum texcoconense Ruiz-Romero et al. 2013, strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.