STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ36795.1Hypothetical protein. (338 aa)    
Predicted Functional Partners:
SDJ98587.1
Lipid kinase, YegS/Rv2252/BmrU family.
   
 
  0.514
mutS2
dsDNA-specific endonuclease/ATPase MutS2; Has ATPase and non-specific DNA-binding activities. Belongs to the DNA mismatch repair MutS family. Archaeal Muts2 subfamily.
 
     0.501
SDJ52314.1
MutS domain V.
 
     0.479
SDK37481.1
Rad3-related DNA helicase.
 
     0.476
SDK78215.1
Arginine decarboxylase.
  
     0.475
SDJ51485.1
RecJ-like exonuclease, contains DnaJ-type Zn finger domain.
  
     0.472
SDJ80941.1
Glycosyl transferase family 2.
 
 
 0.463
SDK26157.1
HEAT repeat-containing protein.
  
     0.463
SDJ41390.1
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
  
    0.422
SDK44722.1
Replication factor A1.
  
     0.411
Your Current Organism:
Natronorubrum texcoconense
NCBI taxonomy Id: 1095776
Other names: CECT 8067, DSM 25211, JCM 17497, N. texcoconense, Natronorubrum sp. B4, Natronorubrum texcoconense Ruiz-Romero et al. 2013, strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.