STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ42957.1ATP-binding cassette, subfamily B. (642 aa)    
Predicted Functional Partners:
SDK97693.1
Putative ABC transport system ATP-binding protein.
   
0.912
SDK55631.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family.
 
     
0.891
dnaK
Molecular chaperone DnaK; Acts as a chaperone.
  
 0.735
infB
Translation initiation factor eaIF-5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
  
 
 
 0.729
SDK15320.1
Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family.
  
 
 
 0.723
SDJ46073.1
Protein-tyrosine-phosphatase.
 
 
 
 0.708
SDK84554.1
ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family.
 
 
 0.697
SDJ52595.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family.
 
     
0.691
SDK61503.1
Protein-tyrosine-phosphatase.
   
 
 0.662
SDJ59700.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
    
 
 0.657
Your Current Organism:
Natronorubrum texcoconense
NCBI taxonomy Id: 1095776
Other names: CECT 8067, DSM 25211, JCM 17497, N. texcoconense, Natronorubrum sp. B4, Natronorubrum texcoconense Ruiz-Romero et al. 2013, strain B4
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