STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ50978.1Sugar-specific transcriptional regulator TrmB. (253 aa)    
Predicted Functional Partners:
SDJ50954.1
Predicted exporter protein, RND superfamily.
 
     0.815
SDK15063.1
Sugar-specific transcriptional regulator TrmB.
  
   
 0.679
SDK78613.1
Restriction endonuclease Mrr.
   
    0.591
SDK57604.1
Sulfopyruvate decarboxylase, alpha subunit.
   
    0.560
SDK57638.1
Sulfopyruvate decarboxylase subunit beta.
   
    0.560
SDJ50921.1
Ribonuclease BN, tRNA processing enzyme.
 
     0.540
SDJ54487.1
Putative nucleotide binding protein.
  
     0.528
SDJ58074.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
   
    0.474
SDK18447.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
   
    0.474
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
  
     0.410
Your Current Organism:
Natronorubrum texcoconense
NCBI taxonomy Id: 1095776
Other names: CECT 8067, DSM 25211, JCM 17497, N. texcoconense, Natronorubrum sp. B4, Natronorubrum texcoconense Ruiz-Romero et al. 2013, strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.