STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK24944.1ABC-type Na+ efflux pump, permease component. (411 aa)    
Predicted Functional Partners:
SDK24993.1
ABC-2 type transport system ATP-binding protein.
  
 
 0.906
SDK24969.1
ABC-2 family transporter protein.
       0.847
SDK25014.1
Polyketide cyclase / dehydrase and lipid transport.
       0.497
SDK24899.1
Hypothetical protein.
       0.470
SDK24922.1
Penicillin amidase.
       0.470
SDK90927.1
ABC-2 type transport system ATP-binding protein.
  
 
 0.452
SDJ33668.1
ABC-2 type transport system ATP-binding protein.
  
 
 0.430
SDJ33896.1
ABC-2 type transport system ATP-binding protein.
  
 
 0.412
SDJ38876.1
ABC-2 type transport system ATP-binding protein.
  
 
 0.412
SDJ39768.1
ABC-2 type transport system ATP-binding protein.
  
 
 0.412
Your Current Organism:
Natronorubrum texcoconense
NCBI taxonomy Id: 1095776
Other names: CECT 8067, DSM 25211, JCM 17497, N. texcoconense, Natronorubrum sp. B4, Natronorubrum texcoconense Ruiz-Romero et al. 2013, strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.