STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK26288.1Iron-regulated ABC transporter permease protein SufD. (406 aa)    
Predicted Functional Partners:
SDK26345.1
Fe-S cluster assembly ATP-binding protein.
 0.999
SDK38021.1
Cysteine desulfurase.
 0.960
SDJ35908.1
Selenocysteine lyase/Cysteine desulfurase.
 0.929
SDK37853.1
Nitrogen fixation protein NifU.
  
 
 0.915
SDK26317.1
Iron-regulated ABC transporter membrane component SufB.
 
   
0.868
SDK14760.1
Iron-sulfur cluster assembly protein.
  
 
 0.776
SDJ50259.1
phenylacetate-CoA oxygenase, PaaJ subunit.
 
   
 0.559
SDK26238.1
Hypothetical protein.
       0.534
SDK26208.1
Mn-dependent transcriptional regulator, DtxR family.
     
 0.502
SDK26264.1
Hypothetical protein.
       0.476
Your Current Organism:
Natronorubrum texcoconense
NCBI taxonomy Id: 1095776
Other names: CECT 8067, DSM 25211, JCM 17497, N. texcoconense, Natronorubrum sp. B4, Natronorubrum texcoconense Ruiz-Romero et al. 2013, strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.