STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK58549.1CAAX protease self-immunity. (269 aa)    
Predicted Functional Partners:
SDK58587.1
Hypothetical protein.
       0.773
SDK69926.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.609
SDK67401.1
Hypothetical protein.
   
    0.606
SDK58627.1
Ketopantoate reductase.
 
     0.582
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
   
    0.576
SDJ38757.1
Monovalent cation:H+ antiporter-2, CPA2 family.
   
    0.521
SDJ38782.1
Kef-type K+ transport system, membrane component KefB.
   
    0.521
SDJ43369.1
Monovalent cation:H+ antiporter-2, CPA2 family.
   
    0.521
SDJ43406.1
Kef-type K+ transport system, membrane component KefB.
   
    0.521
SDJ67143.1
Monovalent cation:H+ antiporter-2, CPA2 family.
   
    0.521
Your Current Organism:
Natronorubrum texcoconense
NCBI taxonomy Id: 1095776
Other names: CECT 8067, DSM 25211, JCM 17497, N. texcoconense, Natronorubrum sp. B4, Natronorubrum texcoconense Ruiz-Romero et al. 2013, strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.