STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK78170.1Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat. (344 aa)    
Predicted Functional Partners:
SDK37649.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.662
SDJ45351.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.661
SDK37752.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.654
SDJ57392.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.639
SDK27884.1
HEAT repeat-containing protein.
  
     0.636
SDJ47877.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.611
SDJ33129.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.604
SDJ52568.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
    
   0.556
SDK78139.1
Hypothetical protein.
       0.527
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
 
 
  0.487
Your Current Organism:
Natronorubrum texcoconense
NCBI taxonomy Id: 1095776
Other names: CECT 8067, DSM 25211, JCM 17497, N. texcoconense, Natronorubrum sp. B4, Natronorubrum texcoconense Ruiz-Romero et al. 2013, strain B4
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