STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETA70098.1IMG reference gene:2510909674; PFAM: Protein of unknown function (DUF1479). (410 aa)    
Predicted Functional Partners:
ETA70099.1
methionine-R-sulfoxide reductase; IMG reference gene:2510909675; PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase.
       0.773
ETA70100.1
Deacetylase, histone deacetylase/acetoin utilization protein; IMG reference gene:2510909676; PFAM: Histone deacetylase domain.
       0.773
ETA70101.1
Phosphoglycerate dehydrogenase-like oxidoreductase; IMG reference gene:2510909677; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.
       0.773
ETA70102.1
DMT(drug/metabolite transporter) superfamily permease; IMG reference gene:2510909678; PFAM: EamA-like transporter family.
       0.773
ETA70103.1
glycine/D-amino acid oxidase, deaminating; IMG reference gene:2510909679; PFAM: FAD dependent oxidoreductase.
       0.773
ETA70296.1
IMG reference gene:2510909882; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase small subunit family protein, proteobacterial; glutamate synthases, NADH/NADPH, small subunit.
  
  
 0.593
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
       0.588
ETA70105.1
Peptidoglycan glycosyltransferase; IMG reference gene:2510909681; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2.
       0.588
ETA70106.1
IMG reference gene:2510909682; PFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD.
       0.588
ETA70107.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.588
Your Current Organism:
Pelagibacter ubique HIMB083
NCBI taxonomy Id: 1096769
Other names: C. Pelagibacter ubique HIMB083, Candidatus Pelagibacter ubique HIMB083, Candidatus Pelagibacter ubique str. HIMB083, Candidatus Pelagibacter ubique strain HIMB083
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.