STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAPDE_003766Putative snoRNP assembly factor Naf1. (482 aa)    
Predicted Functional Partners:
TAPDE_004695
PUA domain-containing protein.
   
 
 0.973
TAPDE_004155
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.944
TAPDE_005298
Uncharacterized protein.
   
 
 0.941
TAPDE_000733
Pseudouridine synthase.
   
 
 0.897
TAPDE_002596
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.691
TAPDE_003926
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.671
TAPDE_003520
60S ribosomal protein L7a.
   
 
 0.647
TAPDE_002504
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.
   
 
  0.628
TAPDE_001897
Uncharacterized protein.
   
  
 0.612
TAPDE_004732
Nop domain-containing protein.
   
  0.589
Your Current Organism:
Taphrina deformans
NCBI taxonomy Id: 1097556
Other names: T. deformans PYCC 5710, Taphrina deformans CBS 356.35, Taphrina deformans PYCC 5710
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