STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001269405_04320Unannotated protein. (470 aa)    
Predicted Functional Partners:
GCA_001269405_02704
Unannotated protein.
  
  
  0.720
GCA_001269405_01611
Unannotated protein.
 
     0.649
GCA_001269405_04321
Unannotated protein.
       0.628
GCA_001269405_04319
Unannotated protein.
       0.556
GCA_001269405_01613
Unannotated protein.
 
    0.551
GCA_001269405_00536
Unannotated protein.
 
    0.530
GCA_001269405_01881
Unannotated protein.
  
  
  0.513
GCA_001269405_03298
Unannotated protein.
  
    0.512
GCA_001269405_01871
Unannotated protein.
 
     0.490
GCA_001269405_01612
Unannotated protein.
 
     0.486
Your Current Organism:
Limnohabitans sp. 2KL3
NCBI taxonomy Id: 1100700
Other names: L. sp. 2KL-3, Limnohabitans sp. 2KL-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.