STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001269365_00193Unannotated protein. (346 aa)    
Predicted Functional Partners:
GCA_001269365_01738
Unannotated protein.
 
 
 0.955
GCA_001269365_01101
Unannotated protein.
 
  
 0.947
GCA_001269365_01403
Unannotated protein.
    
  0.902
GCA_001269365_02077
Unannotated protein.
  
 
 0.885
GCA_001269365_02078
Unannotated protein.
  
 
 0.885
GCA_001269365_01737
Unannotated protein.
 
 
 0.837
GCA_001269365_01740
Unannotated protein.
  
  
 0.833
GCA_001269365_01733
Unannotated protein.
 
 
 0.830
GCA_001269365_01735
Unannotated protein.
 
  
 0.823
GCA_001269365_01739
Unannotated protein.
 
 
 0.814
Your Current Organism:
Limnohabitans sp. Rim11
NCBI taxonomy Id: 1100719
Other names: L. sp. Rim11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.