Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_0045Alcohol dehydrogenase. (330 aa)    
Predicted Functional Partners:
CF8_3055
Dehydratase.
 
  0.859
CF8_2801
PTS system, fructose subfamily, IIC subunit.
     
 0.809
CF8_1351
Aldehyde dehydrogenase.
  
 0.790
CF8_0046
Endothelin-converting protein 1.
       0.701
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
     
 0.695
CF8_1144
(Acyl-carrier-protein) S-malonyltransferase.
    
 0.669
CF8_3857
Glycosyl transferase family protein.
     
  0.625
CF8_2797
Alcohol dehydrogenase.
  
 
 0.616
CF8_4183
Short-chain dehydrogenase/reductase SDR.
  
 
  0.599
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.589
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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