Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_0068Ferritin, Dps family protein; Iron-storage protein. (172 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.792
CF8_0069
TetR family transcriptional regulator.
       0.773
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
   
   0.673
rpmC
50S ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.
   
   0.618
CF8_3309
Multicopper oxidase, type 3.
     
 0.590
CF8_4093
Multicopper oxidase, type 3.
     
 0.590
CF8_0071
propionyl-CoA carboxylase.
       0.541
CF8_0793
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
      
 0.518
rpsP
SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.
   
    0.485
CF8_0072
Carbamoyl-phosphate synthase L chain.
       0.431
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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