Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CF8_0068 | CF8_0069 | Ferritin, Dps family protein; Iron-storage protein. | TetR family transcriptional regulator. | 0.773 |
CF8_0068 | CF8_0071 | Ferritin, Dps family protein; Iron-storage protein. | propionyl-CoA carboxylase. | 0.541 |
CF8_0068 | CF8_0072 | Ferritin, Dps family protein; Iron-storage protein. | Carbamoyl-phosphate synthase L chain. | 0.431 |
CF8_0068 | CF8_0073 | Ferritin, Dps family protein; Iron-storage protein. | hydroxymethylglutaryl-CoA lyase. | 0.431 |
CF8_0068 | CF8_0074 | Ferritin, Dps family protein; Iron-storage protein. | Hypothetical protein. | 0.407 |
CF8_0069 | CF8_0068 | TetR family transcriptional regulator. | Ferritin, Dps family protein; Iron-storage protein. | 0.773 |
CF8_0069 | CF8_0071 | TetR family transcriptional regulator. | propionyl-CoA carboxylase. | 0.638 |
CF8_0069 | CF8_0072 | TetR family transcriptional regulator. | Carbamoyl-phosphate synthase L chain. | 0.479 |
CF8_0069 | CF8_0073 | TetR family transcriptional regulator. | hydroxymethylglutaryl-CoA lyase. | 0.433 |
CF8_0069 | CF8_0074 | TetR family transcriptional regulator. | Hypothetical protein. | 0.407 |
CF8_0069 | CF8_1357 | TetR family transcriptional regulator. | Regulatory protein, TetR. | 0.522 |
CF8_0071 | CF8_0068 | propionyl-CoA carboxylase. | Ferritin, Dps family protein; Iron-storage protein. | 0.541 |
CF8_0071 | CF8_0069 | propionyl-CoA carboxylase. | TetR family transcriptional regulator. | 0.638 |
CF8_0071 | CF8_0072 | propionyl-CoA carboxylase. | Carbamoyl-phosphate synthase L chain. | 0.984 |
CF8_0071 | CF8_0073 | propionyl-CoA carboxylase. | hydroxymethylglutaryl-CoA lyase. | 0.927 |
CF8_0071 | CF8_0074 | propionyl-CoA carboxylase. | Hypothetical protein. | 0.564 |
CF8_0072 | CF8_0068 | Carbamoyl-phosphate synthase L chain. | Ferritin, Dps family protein; Iron-storage protein. | 0.431 |
CF8_0072 | CF8_0069 | Carbamoyl-phosphate synthase L chain. | TetR family transcriptional regulator. | 0.479 |
CF8_0072 | CF8_0071 | Carbamoyl-phosphate synthase L chain. | propionyl-CoA carboxylase. | 0.984 |
CF8_0072 | CF8_0073 | Carbamoyl-phosphate synthase L chain. | hydroxymethylglutaryl-CoA lyase. | 0.890 |
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