Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0077Hypothetical protein. (226 aa)    
Predicted Functional Partners:
aat
leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
 
     0.775
CF8_0122
Hypothetical protein.
  
     0.764
CF8_1188
Hypothetical protein.
  
     0.740
CF8_3854
Hypothetical protein.
  
     0.633
CF8_0149
Amino acid-binding ACT domain-containing.
  
     0.615
CF8_1463
Hypothetical protein.
  
     0.610
CF8_0867
Hypothetical protein.
  
     0.581
CF8_2932
Cytidine/deoxycytidylate.
  
     0.564
CF8_0399
Hypothetical protein.
  
     0.546
CF8_1306
Hypothetical protein.
  
     0.532
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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