Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CF8_0087 | CF8_0088 | CF8_0087 | CF8_0088 | Adenylyl cyclase class-3/4/guanylyl cyclase. | Cyclic nucleotide-binding protein. | 0.943 |
CF8_0087 | arcA | CF8_0087 | CF8_0089 | Adenylyl cyclase class-3/4/guanylyl cyclase. | Arginine deiminase. | 0.535 |
CF8_0088 | CF8_0087 | CF8_0088 | CF8_0087 | Cyclic nucleotide-binding protein. | Adenylyl cyclase class-3/4/guanylyl cyclase. | 0.943 |
CF8_0088 | arcA | CF8_0088 | CF8_0089 | Cyclic nucleotide-binding protein. | Arginine deiminase. | 0.595 |
CF8_0090 | arcA | CF8_0090 | CF8_0089 | Hypothetical protein. | Arginine deiminase. | 0.497 |
CF8_0865 | CF8_3927 | CF8_0865 | CF8_3927 | Succinyl-diaminopimelate desuccinylase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.778 |
CF8_0865 | arcA | CF8_0865 | CF8_0089 | Succinyl-diaminopimelate desuccinylase. | Arginine deiminase. | 0.762 |
CF8_0865 | argG | CF8_0865 | CF8_3929 | Succinyl-diaminopimelate desuccinylase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily. | 0.828 |
CF8_1038 | CF8_2584 | CF8_1038 | CF8_2584 | Pyridoxamine 5'-phosphate oxidase-like protein. | NAD-dependent epimerase/dehydratase. | 0.605 |
CF8_1038 | CF8_3056 | CF8_1038 | CF8_3056 | Pyridoxamine 5'-phosphate oxidase-like protein. | NAD-dependent epimerase/dehydratase. | 0.605 |
CF8_1038 | arcA | CF8_1038 | CF8_0089 | Pyridoxamine 5'-phosphate oxidase-like protein. | Arginine deiminase. | 0.569 |
CF8_2584 | CF8_1038 | CF8_2584 | CF8_1038 | NAD-dependent epimerase/dehydratase. | Pyridoxamine 5'-phosphate oxidase-like protein. | 0.605 |
CF8_2584 | arcA | CF8_2584 | CF8_0089 | NAD-dependent epimerase/dehydratase. | Arginine deiminase. | 0.475 |
CF8_3056 | CF8_1038 | CF8_3056 | CF8_1038 | NAD-dependent epimerase/dehydratase. | Pyridoxamine 5'-phosphate oxidase-like protein. | 0.605 |
CF8_3056 | arcA | CF8_3056 | CF8_0089 | NAD-dependent epimerase/dehydratase. | Arginine deiminase. | 0.475 |
CF8_3927 | CF8_0865 | CF8_3927 | CF8_0865 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Succinyl-diaminopimelate desuccinylase. | 0.778 |
CF8_3927 | arcA | CF8_3927 | CF8_0089 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Arginine deiminase. | 0.989 |
CF8_3927 | argG | CF8_3927 | CF8_3929 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily. | 0.999 |
CF8_3927 | argH | CF8_3927 | CF8_3930 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Argininosuccinate lyase. | 0.993 |
arcA | CF8_0087 | CF8_0089 | CF8_0087 | Arginine deiminase. | Adenylyl cyclase class-3/4/guanylyl cyclase. | 0.535 |
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