STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcAArginine deiminase. (408 aa)    
Predicted Functional Partners:
CF8_3927
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 
 0.989
argH
Argininosuccinate lyase.
     
 0.910
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
     
 0.905
CF8_0865
Succinyl-diaminopimelate desuccinylase.
  
 
 0.762
CF8_0088
Cyclic nucleotide-binding protein.
     
 0.595
CF8_1038
Pyridoxamine 5'-phosphate oxidase-like protein.
   
    0.569
CF8_0087
Adenylyl cyclase class-3/4/guanylyl cyclase.
       0.535
CF8_0090
Hypothetical protein.
       0.497
CF8_2584
NAD-dependent epimerase/dehydratase.
   
    0.475
CF8_3056
NAD-dependent epimerase/dehydratase.
   
    0.475
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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