Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_0098Hypothetical protein. (131 aa)    
Predicted Functional Partners:
CF8_2186
Luciferase family protein.
  
     0.766
CF8_3114
Luciferase family protein.
  
     0.761
CF8_2977
LPPG:FO 2-phospho-L-lactate transferase.
 
     0.759
CF8_2978
F420-dependent oxidoreductase, putative.
  
   
 0.753
CF8_3315
Dehydrogenase.
  
     0.706
CF8_0142
Dehydrogenase.
  
     0.673
CF8_1236
UBA/THIF-type NAD/FAD binding protein.
  
 0.608
CF8_2895
Hypothetical protein.
  
     0.606
CF8_4123
Hypothetical protein.
    
  0.589
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
     
  0.587
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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