STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0102GCN5-related N-acetyltransferase. (179 aa)    
Predicted Functional Partners:
CF8_0103
HAD family hydrolase.
      0.889
CF8_0101
HAD family hydrolase.
       0.789
CF8_0104
Hypothetical protein.
       0.697
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.653
CF8_2503
Glutamate synthase (NADH) large subunit.
   
 
 0.614
CF8_3095
Hypothetical protein.
  
    0.597
CF8_0136
LuxR family transcriptional regulator.
  
 
   0.594
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
    
  0.581
CF8_3288
Hypothetical protein.
 
     0.576
CF8_0099
Phosphoesterase, PA-phosphatase.
 
    0.571
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.