Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0157GntR family transcriptional regulator. (225 aa)    
Predicted Functional Partners:
CF8_0156
Hypothetical protein.
 
     0.831
CF8_1648
GntR family transcriptional regulator.
  
  
 0.494
CF8_0162
Trap dicarboxylate transporter, dctm subunit.
 
     0.472
CF8_0642
GntR family transcriptional regulator.
  
    0.455
CF8_1537
GntR family transcriptional regulator.
  
    0.451
CF8_0160
TRAP dicarboxylate transporter- DctP subunit.
 
     0.442
CF8_0958
GntR-family transcriptional regulator.
  
    0.440
CF8_0158
Alcohol dehydrogenase.
       0.415
CF8_4127
Hypothetical protein.
  
    0.410
CF8_0275
IclR family transcriptional regulator.
  
    0.403
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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