Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CF8_0165 | CF8_0166 | CF8_0165 | CF8_0166 | Carboxyl transferase. | L-carnitine dehydratase/bile acid-inducible; Belongs to the CoA-transferase III family. | 0.893 |
CF8_0165 | CF8_1438 | CF8_0165 | CF8_1438 | Carboxyl transferase. | methylmalonyl-CoA mutase. | 0.735 |
CF8_0165 | CF8_3066 | CF8_0165 | CF8_3066 | Carboxyl transferase. | methylmalonyl-CoA mutase. | 0.458 |
CF8_0165 | CF8_3519 | CF8_0165 | CF8_3519 | Carboxyl transferase. | Citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. | 0.608 |
CF8_0165 | CF8_3593 | CF8_0165 | CF8_3593 | Carboxyl transferase. | Carboxyl transferase. | 0.999 |
CF8_0165 | icmF | CF8_0165 | CF8_2551 | Carboxyl transferase. | methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly. | 0.569 |
CF8_0165 | sucC | CF8_0165 | CF8_3098 | Carboxyl transferase. | succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.795 |
CF8_0165 | sucD | CF8_0165 | CF8_3097 | Carboxyl transferase. | succinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.797 |
CF8_0166 | CF8_0165 | CF8_0166 | CF8_0165 | L-carnitine dehydratase/bile acid-inducible; Belongs to the CoA-transferase III family. | Carboxyl transferase. | 0.893 |
CF8_0166 | CF8_1438 | CF8_0166 | CF8_1438 | L-carnitine dehydratase/bile acid-inducible; Belongs to the CoA-transferase III family. | methylmalonyl-CoA mutase. | 0.487 |
CF8_0166 | CF8_3066 | CF8_0166 | CF8_3066 | L-carnitine dehydratase/bile acid-inducible; Belongs to the CoA-transferase III family. | methylmalonyl-CoA mutase. | 0.487 |
CF8_0166 | CF8_3519 | CF8_0166 | CF8_3519 | L-carnitine dehydratase/bile acid-inducible; Belongs to the CoA-transferase III family. | Citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. | 0.481 |
CF8_0166 | CF8_3593 | CF8_0166 | CF8_3593 | L-carnitine dehydratase/bile acid-inducible; Belongs to the CoA-transferase III family. | Carboxyl transferase. | 0.546 |
CF8_0166 | CF8_4022 | CF8_0166 | CF8_4022 | L-carnitine dehydratase/bile acid-inducible; Belongs to the CoA-transferase III family. | Hypothetical protein. | 0.458 |
CF8_0166 | icmF | CF8_0166 | CF8_2551 | L-carnitine dehydratase/bile acid-inducible; Belongs to the CoA-transferase III family. | methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly. | 0.529 |
CF8_0166 | sucC | CF8_0166 | CF8_3098 | L-carnitine dehydratase/bile acid-inducible; Belongs to the CoA-transferase III family. | succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.493 |
CF8_0166 | sucD | CF8_0166 | CF8_3097 | L-carnitine dehydratase/bile acid-inducible; Belongs to the CoA-transferase III family. | succinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.505 |
CF8_1438 | CF8_0165 | CF8_1438 | CF8_0165 | methylmalonyl-CoA mutase. | Carboxyl transferase. | 0.735 |
CF8_1438 | CF8_0166 | CF8_1438 | CF8_0166 | methylmalonyl-CoA mutase. | L-carnitine dehydratase/bile acid-inducible; Belongs to the CoA-transferase III family. | 0.487 |
CF8_1438 | CF8_3066 | CF8_1438 | CF8_3066 | methylmalonyl-CoA mutase. | methylmalonyl-CoA mutase. | 0.996 |
page 1 of 4