Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0179Extracellular solute-binding protein. (426 aa)    
Predicted Functional Partners:
CF8_0180
Binding-protein-dependent transport system; Overlaps another CDS with the same product name.
 
 0.996
CF8_0182
ABC transporter-like protein; Belongs to the ABC transporter superfamily.
 
 0.996
CF8_0806
Binding-protein-dependent transport system; Overlaps another CDS with the same product name.
 
 0.994
CF8_0807
Binding-protein-dependent transport system; Overlaps another CDS with the same product name.
 
 0.992
CF8_0804
ABC transporter.
  
 0.969
CF8_0291
ABC transporter-like protein.
 
 0.966
CF8_0181
Binding-protein-dependent transport system; Overlaps another CDS with the same product name.
 
  
 0.946
CF8_2959
ABC transporter-like protein.
   
 
 0.835
CF8_1898
Extracellular solute-binding protein.
  
  
 0.816
cysA
Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
  
  
  0.807
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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