CF8_0180 protein (Nocardioides sp. CF8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CF8_0180

Binding-protein-dependent transport system; Overlaps another CDS with the same product name. (321 aa)

Predicted Functional Partners:

CF8_0181

0.999

CF8_0182

0.998

CF8_0806

0.997

CF8_0179

0.996

CF8_0808

0.982

CF8_0291

0.979

CF8_3228

0.973

CF8_0804

0.972

cysA

0.916

CF8_3383

0.903

Your Current Organism:

Nocardioides sp. CF8

NCBI taxonomy Id: 110319
Other names: N. sp. CF8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CF8_0179	CF8_0180	CF8_0179	CF8_0180	Extracellular solute-binding protein.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.996
CF8_0179	CF8_0181	CF8_0179	CF8_0181	Extracellular solute-binding protein.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.946
CF8_0179	CF8_0182	CF8_0179	CF8_0182	Extracellular solute-binding protein.	ABC transporter-like protein; Belongs to the ABC transporter superfamily.	0.996
CF8_0179	CF8_0291	CF8_0179	CF8_0291	Extracellular solute-binding protein.	ABC transporter-like protein.	0.966
CF8_0179	CF8_0804	CF8_0179	CF8_0804	Extracellular solute-binding protein.	ABC transporter.	0.969
CF8_0179	CF8_0806	CF8_0179	CF8_0806	Extracellular solute-binding protein.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.994
CF8_0179	CF8_0808	CF8_0179	CF8_0808	Extracellular solute-binding protein.	Extracellular solute-binding protein.	0.506
CF8_0179	CF8_3383	CF8_0179	CF8_3383	Extracellular solute-binding protein.	Phosphate binding protein.	0.797
CF8_0179	cysA	CF8_0179	CF8_0471	Extracellular solute-binding protein.	Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.807
CF8_0180	CF8_0179	CF8_0180	CF8_0179	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Extracellular solute-binding protein.	0.996
CF8_0180	CF8_0181	CF8_0180	CF8_0181	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.999
CF8_0180	CF8_0182	CF8_0180	CF8_0182	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	ABC transporter-like protein; Belongs to the ABC transporter superfamily.	0.998
CF8_0180	CF8_0291	CF8_0180	CF8_0291	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	ABC transporter-like protein.	0.979
CF8_0180	CF8_0804	CF8_0180	CF8_0804	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	ABC transporter.	0.972
CF8_0180	CF8_0806	CF8_0180	CF8_0806	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.997
CF8_0180	CF8_0808	CF8_0180	CF8_0808	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Extracellular solute-binding protein.	0.982
CF8_0180	CF8_3228	CF8_0180	CF8_3228	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Extracellular solute-binding protein.	0.973
CF8_0180	CF8_3383	CF8_0180	CF8_3383	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Phosphate binding protein.	0.903
CF8_0180	cysA	CF8_0180	CF8_0471	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.916
CF8_0181	CF8_0179	CF8_0181	CF8_0179	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Extracellular solute-binding protein.	0.946