Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CF8_0428 | CF8_0994 | CF8_0428 | CF8_0994 | Phosphoglycerate mutase. | Hypothetical protein. | 0.536 |
CF8_0428 | CF8_2031 | CF8_0428 | CF8_2031 | Phosphoglycerate mutase. | Regulatory protein, MerR. | 0.669 |
CF8_0428 | CF8_2401 | CF8_0428 | CF8_2401 | Phosphoglycerate mutase. | Hypothetical protein. | 0.744 |
CF8_0428 | CF8_2846 | CF8_0428 | CF8_2846 | Phosphoglycerate mutase. | Hypothetical protein. | 0.656 |
CF8_0428 | nucS | CF8_0428 | CF8_1444 | Phosphoglycerate mutase. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.518 |
CF8_0428 | whiB | CF8_0428 | CF8_0209 | Phosphoglycerate mutase. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.666 |
CF8_0994 | CF8_0428 | CF8_0994 | CF8_0428 | Hypothetical protein. | Phosphoglycerate mutase. | 0.536 |
CF8_0994 | CF8_2031 | CF8_0994 | CF8_2031 | Hypothetical protein. | Regulatory protein, MerR. | 0.745 |
CF8_0994 | CF8_2401 | CF8_0994 | CF8_2401 | Hypothetical protein. | Hypothetical protein. | 0.691 |
CF8_0994 | CF8_2846 | CF8_0994 | CF8_2846 | Hypothetical protein. | Hypothetical protein. | 0.734 |
CF8_0994 | nucS | CF8_0994 | CF8_1444 | Hypothetical protein. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.698 |
CF8_0994 | rpoZ | CF8_0994 | CF8_2292 | Hypothetical protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.707 |
CF8_0994 | whiB | CF8_0994 | CF8_0209 | Hypothetical protein. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.715 |
CF8_2031 | CF8_0428 | CF8_2031 | CF8_0428 | Regulatory protein, MerR. | Phosphoglycerate mutase. | 0.669 |
CF8_2031 | CF8_0994 | CF8_2031 | CF8_0994 | Regulatory protein, MerR. | Hypothetical protein. | 0.745 |
CF8_2031 | CF8_2401 | CF8_2031 | CF8_2401 | Regulatory protein, MerR. | Hypothetical protein. | 0.772 |
CF8_2031 | CF8_2846 | CF8_2031 | CF8_2846 | Regulatory protein, MerR. | Hypothetical protein. | 0.739 |
CF8_2031 | nucS | CF8_2031 | CF8_1444 | Regulatory protein, MerR. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.712 |
CF8_2031 | rpoA | CF8_2031 | CF8_0714 | Regulatory protein, MerR. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.683 |
CF8_2031 | rpoZ | CF8_2031 | CF8_2292 | Regulatory protein, MerR. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.897 |
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