Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_0210Anion-transporting ATPase; Overlaps another CDS with the same product name. (390 aa)    
Predicted Functional Partners:
CF8_0211
Anion-transporting ATPase; Overlaps another CDS with the same product name.
 
 
 
 0.993
pyrF
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
    
   0.728
CF8_1013
Mov34/MPN/PAD-1 family protein.
  
   0.698
CF8_0212
Regulatory protein, IclR.
       0.671
ileS
isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.
  
 
   0.659
CF8_1523
CbbX protein.
   
 
 0.632
CF8_3298
Hypothetical protein.
  
     0.628
CF8_0414
NAD-dependent epimerase/dehydratase.
  
     0.627
CF8_2568
Hypothetical protein.
   
   0.614
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
   0.612
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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