STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0210Anion-transporting ATPase; Overlaps another CDS with the same product name. (390 aa)    
Predicted Functional Partners:
CF8_0211
Anion-transporting ATPase; Overlaps another CDS with the same product name.
 
 
   0.999
pyrF
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
    
   0.686
CF8_0212
Regulatory protein, IclR.
       0.671
CF8_3298
Hypothetical protein.
  
     0.628
CF8_0414
NAD-dependent epimerase/dehydratase.
  
     0.627
CF8_2735
Cyclase/dehydrase.
 
     0.604
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
      
 0.596
CF8_3140
Hypothetical protein.
  
     0.588
CF8_1013
Mov34/MPN/PAD-1 family protein.
  
   0.578
CF8_0415
Phospholipid/glycerol acyltransferase.
  
     0.574
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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