Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_0211Anion-transporting ATPase; Overlaps another CDS with the same product name. (339 aa)    
Predicted Functional Partners:
CF8_0210
Anion-transporting ATPase; Overlaps another CDS with the same product name.
 
 
 
 0.993
CF8_3298
Hypothetical protein.
  
     0.744
pyrF
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
    
   0.728
CF8_1013
Mov34/MPN/PAD-1 family protein.
  
   0.712
CF8_2735
Cyclase/dehydrase.
 
    0.691
CF8_0414
NAD-dependent epimerase/dehydratase.
  
     0.688
CF8_3333
Helix-turn-helix domain-containing protein.
  
     0.682
CF8_0212
Regulatory protein, IclR.
       0.671
CF8_1523
CbbX protein.
   
 
 0.632
CF8_3140
Hypothetical protein.
  
     0.615
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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