Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_0212Regulatory protein, IclR. (253 aa)    
Predicted Functional Partners:
CF8_0210
Anion-transporting ATPase; Overlaps another CDS with the same product name.
       0.671
CF8_0211
Anion-transporting ATPase; Overlaps another CDS with the same product name.
       0.671
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
     
  0.634
CF8_1579
Transcriptional regulator.
  
     0.610
CF8_0936
Transcriptional regulator.
  
     0.558
CF8_0165
Carboxyl transferase.
     
  0.542
CF8_3593
Carboxyl transferase.
     
  0.542
CF8_0213
3-oxoacid CoA-transferase, A subunit.
  
    0.538
CF8_0214
butyryl-CoA:acetate CoA transferase.
  
    0.535
CF8_1616
Allophanate hydrolase subunit 1.
  
    0.523
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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