Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_03294-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (446 aa)    
Predicted Functional Partners:
CF8_0330
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.945
CF8_0600
Succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.926
CF8_3133
Succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.926
CF8_3680
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.926
CF8_2503
Glutamate synthase (NADH) large subunit.
     
 0.903
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.864
CF8_3049
Aldehyde dehydrogenase (acceptor).
  
 0.835
CF8_0582
Threonine dehydratase.
   
 
 0.826
panD
L-aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.825
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
     
 0.817
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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